Protein ZmLIM1
ZmLIM1 is a protein in the LIM family.
Information
TF Name: ZmLIM1
Species: Maize
TF Family: LIM
Gene Name(Synonym): LIMTF1
Uniprot ID: B6SU00
Subgenome: 1

Protein ZmLIM1

ZmLIM1 is a protein in the LIM family.

Overview of domains present in v5 transcripts
PF00412
Zm00001eb011840_T002
Zm00001eb011840_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d028550DAPseq no logo sequence fimo position
Zm00001d028550DAPseq no logo sequence fimo position
Zm00001d028550ChIPseq no logo sequence fimo position
Zm00001d028550PChIPseq no logo sequence fimo position

Interactions where ZmLIM1 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmLIM1 is the target  
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There are 176 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb011840_T002 from maize genome v5

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00412
PF00412
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Nucleotide Sequence
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CGAGCAGTCACCAGTGCTTGCTTCT...

GRMZM2G128206_T01 from maize genome v3

Amino Acid Sequence
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MFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASV
KRAAEAQPEQPASDSSS

Nucleotide Sequence
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TCTCTTCTAATGGGTAGGTGGATGG...

GRMZM2G128206_T02 from maize genome v3

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEE

Nucleotide Sequence
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GTGCCTCCATCTTCCGATTCCCATC...

GRMZM2G128206_T03 from maize genome v3


Related TFome: pUT5573

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

Nucleotide Sequence
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GTGCCTCCATCTTCCGATTCCCATC...

GRMZM2G128206_T04 from maize genome v3

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKYLLWNISGSITMGSNGFHN

Nucleotide Sequence
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GTGCCTCCATCTTCCGATTCCCATC...

GRMZM2G128206_T05 from maize genome v3

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSR
TLSFTTETIGMQIQVFVFL

Nucleotide Sequence
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GTGCCTCCATCTTCCGATTCCCATC...

Zm00001d028550_T001 from maize genome v4

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

Nucleotide Sequence
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CGAGCAGTCACCAGTGCTTGCTTCT...

Zm00001d028550_T002 from maize genome v4

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELVSSSIPDHQAKLQGCFQEHKTSVRLVVKLRILLRR

Nucleotide Sequence
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GGCGTTCGTTCTCCTTCTCCATCCC...

Zm00001d028550_T003 from maize genome v4

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKGQSPWVPMAFTTEQILVPF

Nucleotide Sequence
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GGCGTTCGTTCTCCTTCTCCATCCC...

Zm00001eb011840_T001 from maize genome v5

Amino Acid Sequence
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MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKTHFEQLFKETGSYNKSFQSQSP
AKITPEKLAPELTRSPSKAARMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCSHGGCAITPSNYAALEGILYCKH
HFSQLFKEKGSYNHLIKCASVKRAAEAQPEQPASDSSS

Nucleotide Sequence
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CGAGCAGTCACCAGTGCTTGCTTCT...


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